bioperl-ext and alignment

perlfans0511

1^# perlfans0511 发表于 2007-06-18 23:37

bioperl-ext and alignment

how to compile and use bioperl-ext ?

which module can be used for pairwise alignment ?

qiang

2^# qiang 发表于 2007-06-19 09:54

bioperl-ext 试过了么？ .
bioperl-ext 试过了么？ http://search.cpan.org/src/BIRNEY/bioperl-ext-1.4/README

perlfans0511

3^# perlfans0511 发表于 2007-06-19 22:07

Not yet, I will make a t.
Not yet, I will make a try

greatsun

4^# greatsun 发表于 2007-06-27 12:44

thanks！！.

klaus

5^# klaus 发表于 2007-08-04 19:24

编译bioperl-ext可能会比较复杂。还不如shell下直接用clustaw对位来得方便。

或者直接用bioperl写好的script，建议看这里： http://www.bioperl.org/wiki/Bioperl_scripts#Alignment